Your pop-up may be off screen: start themmand, on the keyboard use the combination of ALT+SpaceBar+M then use the arrow keys on your keyboard to nudge it back to view (this is a Windows feaure, you can use it to recover any lost pop-up in LT or other programs).
You can also change the resolution of your monitor to lower settings, the layer manager will show, move it to be centered, then change resolution back. ◦